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With this, Biogenix Labs becomes a Certified Service Partner for Oxford Nanopore and the first lab in Middle East to be certified for providing cost-effective, high accuracy sequencing for genomic epidemiology for Covid-19 strain surveillance in RT-PCR positive cases with a quick turnaround time. This will go on till the next wave,” he added.Biogenix Labs, the UAE’s first Covid-19-accredited large-scale testing laboratory and part of Abu Dhabi-based leading health tech company, G42 Healthcare, has received certification for the use of Oxford Nanopore sequencing technology to conduct SARS-CoV-2 sequencing for Covid-19 surveillance and variant detection. When the Omicron wave started the government was talking about having nine labs. During the Delta wave, six new labs were announced. We are not aware of any training that has taken place except in BMCRI.
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“This will easily take a couple of months. Has the government trained the manpower they have got and procured the bioinformatics,” he questioned.
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ICMR also does not give the data to INSACOG. Sample collected from government labs need many quality checks which is a big struggle. The main problem that INSACOG faces is with sample collection because they have no tie-ups with any sample collection partners. “Only if you have a fully integrated system, you can do a midnight protocol. There is a 24-hour midnight protocol that Oxford Nanopore has come up with. The DNA library bridge amplification cycles take three hours, depending on the panel, the DNA library sequencing takes six hours to 40 hours, and finally, the alignment and data analysis takes one to two days.” Currently, samples are being sent only to NIMHANS and NCBS.”Įxplaining the complete time taken for genome sequencing procedure, he said, “The library preparation takes 90 minutes to two days. But it is not a part of the INSACOG network. One expert said, “The Indian Institute of Science has the capacity to do genome sequencing. Researchers also said bringing down the turnaround time to 24 hours to 36 hours, seems to be an overambitious target given the technicalities and resource-intensive processes involved. Experts requesting anonymity said as of now, only two are functional: NIMHANS and NCBS labs in Bengaluru. However, the minister did not say how many of these labs have been made operational. The turnaround time is currently two to three days, we’re trying to bring it down to 24 hours to 36 hours,” said Sudhakar. The preparations are on to set up a lab each in Hubballi and Ballari. Two labs are in Bengaluru, and one each in Mysuru, Belagavi, and Kalaburagi.
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“Karnataka is the first state in the country to set up five genome sequencing labs. However, according to the experts only two labs are functioning. Health and Medical Education Minister K Sudhakar on Thursday said that nine genome sequencing labs, including five set up by the state government, are sequencing 1,875 samples in one batch.